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Pairwise sequence alignment

I have read the disclaimer and I agree with the conditions and limitations associated with the usage of the software

Pairwise sequence alignment parameters

Minimum similarity to keep results (0-100%):

Gap creation penalty (1-100):

Minimum overlap to keep results (0-100%):

Gap extension penalty (1-10):

Minimum overlap for rating reward (0-100%):

Word size (1-256):

Maximum alignments to display (1-1000):

Penalty for a nucleotide mismatch:

Select sorting mode:

Reward for a nucleotide match:

Select the reference(s) file(s) to be used for the alignment:

	Name	Location	Status
	?	http://www.fungalbiodiversitycentre.com/phaeoacremonium/	WS_Alignment error (1010) : BioloMICS - InitWebSite - Unsuccessfull
	FUNCBS	http://www.cbs.knaw.nl/collections/	Reachable

Paste sequence to align: